VIRsiRNAdb

../../tmp/servers/virsirnadb/1081560141
Result for your query siRNA sequence

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	Strain name	Start	Alignment	End	% Identity
Query	virsi1265	1	`gttggagaaccaaatctca`	19
AF177911.1	Coxsackievirus A16 polyprotein gene, complete cds	4243	`...................`	4261	100
AY790926.1	Human coxsackievirus A16 strain shzh00-1, complete genome	4243	`...................`	4261	100
EU262658.1	Human coxsackievirus A16 strain shzh05-1, complete genome	4243	`...................`	4261	100
GQ279371.1	Human coxsackievirus A16 strain SZ/HK08-7, complete genome	4243	`...................`	4261	100
HQ269389.1	Human coxsackievirus A16 isolate XM-CA16-3560, complete genome	4244	`...................`	4262	100
AY421766.1	Human coxsackievirus A8 strain Donovan, complete genome	4229	`.................._`	4246	94
FJ859058.1	Human poliovirus 1 isolate 10050, complete genome	4288	`.c.................`	4306	94
FJ859059.1	Human poliovirus 1 isolate 10086c, complete genome	4288	`.c.................`	4306	94
FJ859061.1	Human poliovirus 1 isolate 10092c, complete genome	4288	`.c.................`	4306	94
FJ859062.1	Human poliovirus 1 isolate 10094c, complete genome	4288	`.c.................`	4306	94
FJ859063.1	Human poliovirus 1 isolate 10095c, complete genome	4288	`.c.................`	4306	94
AY421769.1	Human coxsackievirus A14 strain G-14, complete genome	4250	`.........t.........`	4268	94
FJ198212.1	Human coxsackievirus A16 strain GZ08, complete genome	4243	`............g......`	4261	94
AB575935.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 480	4187	`_................._`	4203	89
AB575936.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961	4182	`_................._`	4198	89
AF499639.1	Human coxsackievirus A17 strain G12, complete genome	4305	`...............a.._`	4322	89
EF555645.1	Human enterovirus 102, complete genome	4285	`...............a.._`	4302	89
FJ859064.1	Human poliovirus 1 isolate 10097c, complete genome	4288	`.c................_`	4305	89
U22521.1	ETU22521 Human enterovirus 71 polyprotein gene, complete cds	4241	`.............g...._`	4258	89
DQ452074.1	Human enterovirus 71 strain 804/NO/03, complete genome	4243	`............g....._`	4260	89
FJ172159.1	Human enterovirus 71 isolate NUH0075/SIN/08, complete genome	4203	`...............t.._`	4220	89
AB575942.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369	4176	`...............t.._`	4193	89
X04468.1	Poliovirus type 3 strain 23127 complete genome	4283	`...............tg..`	4301	89
V01148.1	Genome of human poliovirus type 1 (Mahoney strain). (One of two versi	4283	`.c....a............`	4301	89
V01150.1	Human poliovirus strain Sabin 1 complete genome, strain Sabin 1	4288	`.c....a............`	4306	89
D00625.1	POL2CG1 Human poliovirus 2 genomic RNA, complete genome	4287	`...............tg..`	4305	89
M12197.1	POL2LAN Poliovirus type 2 (Lansing strain), complete genome	4287	`...............tg..`	4305	89
AJ132960.1	Human poliovirus 1, complete genome. Isolated from faeces of immunode	4289	`.c....a............`	4307	89
AJ416942.1	Human poliovirus 1 genomic RNA for polyprotein, strain CHAT 10A-11	4288	`.c....a............`	4306	89
AJ430385.1	Human poliovirus 1 genomic RNA for polyprotein gene, strain Cox	4288	`.c....a............`	4306	89
AY184219.1	Human poliovirus 1 strain Sabin 1, complete genome	4288	`.c....a............`	4306	89
AY238473.1	Human poliovirus 2 strain MEF-1 polyprotein gene, complete cds	4287	`...............tg..`	4305	89
AF538840.1	Human poliovirus 1 isolate TCDCE01-135, complete genome	4258	`.c....a............`	4276	89
AF538842.1	Human poliovirus 1 isolate TCDC01-330, complete genome	4280	`.c....a............`	4298	89
AF538843.1	Human poliovirus 1 isolate TCDC01-861, complete genome	4280	`.c....a............`	4298	89
AY928383.1	Human poliovirus 1 isolate d261-2002037607 polyprotein gene, complete	4280	`.c....a............`	4298	89
AY928384.1	Human poliovirus 1 isolate d224-2002037606 polyprotein gene, complete	4280	`.c....a............`	4298	89
AY928385.1	Human poliovirus 1 isolate d054-2002037604 polyprotein gene, complete	4280	`.c....a............`	4298	89
AY928386.1	Human poliovirus 1 isolate d179-2002037605 polyprotein gene, complete	4280	`.c....a............`	4298	89
AY928387.1	Human poliovirus 1 isolate d018-2002037602 polyprotein gene, complete	4280	`.c....a............`	4298	89
EF682343.1	Human poliovirus 1 strain USA10774 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682344.1	Human poliovirus 1 strain USA10775 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682345.1	Human poliovirus 1 strain USA10773 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682346.1	Human poliovirus 1 strain USA10780 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682347.1	Human poliovirus 1 strain USA10781 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682348.1	Human poliovirus 1 strain USA10782 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682349.1	Human poliovirus 1 strain USA10771 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682350.1	Human poliovirus 1 strain USA10772 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682351.1	Human poliovirus 1 strain USA10778 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682352.1	Human poliovirus 1 strain USA10770 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682353.1	Human poliovirus 1 strain USA10777 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682354.1	Human poliovirus 1 strain USA10779 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682355.1	Human poliovirus 1 strain USA10776 polyprotein gene, complete cds	4262	`.c....a............`	4280	89
EF682356.1	Human poliovirus 1 strain USA10784, complete genome	4288	`.c....a............`	4306	89
EF682357.1	Human poliovirus 1 strain USA10785, complete genome	4288	`.c....a............`	4306	89
EF682358.1	Human poliovirus 1 strain USA10783, complete genome	4288	`.c....a............`	4306	89
EF682359.1	Human poliovirus 1 strain USA10786, complete genome	4288	`.c....a............`	4306	89
EU794953.1	Human poliovirus 1 isolate A21 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794954.1	Human poliovirus 1 isolate A49 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794955.1	Human poliovirus 1 isolate A63 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794956.1	Human poliovirus 1 isolate A84 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794957.1	Human poliovirus 1 isolate A88 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794958.1	Human poliovirus 1 isolate A91 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794959.1	Human poliovirus 1 isolate A102 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794960.1	Human poliovirus 1 isolate A105 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794961.1	Human poliovirus 1 isolate A118 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794962.1	Human poliovirus 1 isolate A199 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794963.1	Human poliovirus 1 isolate A449 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
EU794964.1	Human poliovirus 1 isolate A649 polyprotein gene, complete cds	4240	`.c....a............`	4258	89
FJ769378.1	Human poliovirus 1 strain CHN8184/GZ/CHN/2004, complete genome	4288	`.c....a............`	4306	89
FJ769379.1	Human poliovirus 1 strain CHN8229-1/GZ/CHN/2004, complete genome	4288	`.c....a............`	4306	89
FJ769380.1	Human poliovirus 1 strain CHN8229-2/GZ/CHN/2004, complete genome	4288	`.c....a............`	4306	89
FJ769381.1	Human poliovirus 1 strain CHN8229-3/GZ/CHN/2004, complete genome	4288	`.c....a............`	4306	89
FJ769382.1	Human poliovirus 1 strain CHN8233c/GZ/CHN/2004, complete genome	4288	`.c....a............`	4306	89
FJ769383.1	Human poliovirus 1 strain CHN8225c/GZ/CHN/2004, complete genome	4288	`.c....a............`	4306	89
FJ769384.1	Human poliovirus 1 strain CHN8248c/GZ/CHN/2004, complete genome	4288	`.c....a............`	4306	89
FJ769385.1	Human poliovirus 1 strain CHN8264c/GZ/CHN/2004, complete genome	4288	`.c....a............`	4306	89
FJ859060.1	Human poliovirus 1 isolate 10091c, complete genome	4288	`.c.............t...`	4306	89
FJ914252.2	Human poliovirus 3 strain SWI10947, complete genome	4283	`.c..............g..`	4301	89
DQ341367.1	Human enterovirus 71 isolate MY821-3-SAR-97, complete genome	4244	`.........t..g......`	4262	89
DQ341368.1	Human enterovirus 71 isolate MY104-9-SAR-97, complete genome	4244	`.........t..g......`	4262	89
AM396588.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/	4235	`.........t..g......`	4253	89
EU364841.1	Human enterovirus 71 strain 26M/AUS/4/99, complete genome	4245	`.........t..g......`	4263	89
EU376004.1	Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome	4245	`.........t..g......`	4263	89
EU376005.1	Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome	4245	`.........t..g......`	4263	89
AB469182.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E	4243	`.........t..g......`	4261	89
AB469183.1	Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71	4978	`.........t..g......`	4996	89
AB550334.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o	4243	`.........t..g......`	4261	89
AB550335.1	Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L	4243	`.........t..g......`	4261	89
AF119795.2	Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds	4242	`_..............t.._`	4258	84
AF136379.1	Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds	4244	`_..............t.._`	4260	84
AF119796.3	Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds	4242	`_..............t.._`	4258	84
AF176044.1	Enterovirus 71 polyprotein gene, complete cds	4245	`_..............t.._`	4261	84
AF304457.1	Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds	4244	`_..............t.._`	4260	84
AF304458.1	Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds	4244	`_..............t.._`	4260	84
AF304459.1	Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds	4244	`_..............t.._`	4260	84
DQ060149.1	Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome	4244	`_..............t.._`	4260	84
DQ341355.1	Human enterovirus 71 isolate 06-KOR-00, complete genome	4243	`_..............t.._`	4259	84
DQ341356.1	Human enterovirus 71 isolate 03-KOR-00, complete genome	4243	`_..............t.._`	4259	84
DQ341357.1	Human enterovirus 71 isolate 7F-AUS-6-99, complete genome	4243	`_..............t.._`	4259	84
DQ341358.1	Human enterovirus 71 isolate S40221-SAR-00, complete genome	4243	`_...........g....._`	4259	84
DQ341359.1	Human enterovirus 71 isolate S10862-SAR-98, complete genome	4243	`_.....a..........._`	4259	84
DQ341360.1	Human enterovirus 71 isolate J115-MAL-01, complete genome	4242	`_...........g....._`	4258	84
DQ341361.1	Human enterovirus 71 isolate 1M-AUS-12-00, complete genome	4243	`_...........g....._`	4259	84
DQ381846.1	Human enterovirus 71 strain 6F/AUS/6/99, complete genome	4243	`_..............t.._`	4259	84
AM396584.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	4242	`_..............t.._`	4258	84
AM396585.1	Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P	4242	`_..............t.._`	4258	84
EU414334.1	Human enterovirus 71 strain PLday4-CH-06, complete genome	4242	`_...........g....._`	4258	84
EU414335.1	Human enterovirus 71 strain PLday1-CH-06, complete genome	4242	`_...........g....._`	4258	84
AB550340.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org	4243	`_...........g....._`	4259	84
AB550341.1	Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS	4243	`_...........g....._`	4259	84
AB575911.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100	4181	`__.a...............`	4197	84
AB575912.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108	4195	`__.a...............`	4211	84
AB575937.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141	4155	`_...........g....._`	4171	84
AB575939.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365	4174	`_..............t.._`	4190	84
HQ423141.1	Human coxsackievirus A16 strain KMM/08, complete genome	4245	`__.............t...`	4261	84
HQ423142.1	Human enterovirus 71 strain KMM/09, complete genome	4242	`__..........g......`	4258	84
HQ423143.1	Human enterovirus 71 strain KM186/09, complete genome	4242	`__..........g......`	4258	84
AB205395.1	Human enterovirus C genomic RNA, complete genome, strain: Cambodia-02	4279	`...a............g._`	4296	84
AY421764.1	Human coxsackievirus A6 strain Gdula, complete genome	4267	`...a..a..........._`	4284	84
AB204852.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR	4241	`............gg...._`	4258	84
AB204853.1	Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts	4241	`............gg...._`	4258	84
GU434678.1	Human enterovirus 71 strain EV71-Hubei-09-China, complete genome	4241	`............gg...._`	4258	84
AB575941.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248	4181	`.........t.....t.._`	4198	84
AB575948.1	Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101	4199	`.........t.....t.._`	4216	84
AY421765.1	Human coxsackievirus A7 strain Parker, complete genome	4239	`__....a..........._`	4254	78
EF667344.1	Human enterovirus 92 strain RJG7, complete genome	4197	`.c..............___`	4212	78
AJ293918.1	Human poliovirus type 3 complete genome, live-attenuated strain USOL-	4284	`.c.a.....t.........`	4302	84
AF538841.1	Human poliovirus 1 isolate TCDC01-113, complete genome	4288	`.c....a..t.........`	4306	84
GQ279368.1	Human coxsackievirus A16 strain SZ/HK08-3, complete genome	4245	`__.a...........t...`	4261	78
AB550332.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org	4243	`_...........g..t.._`	4259	78
AB550333.1	Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1	4243	`_...........g..t.._`	4259	78
AF405666.1	Human poliovirus 1 isolate HAI01007, complete genome	4288	`.........t..g..a.._`	4305	78
FJ439769.1	Human enterovirus 71 strain Fuyang-0805, complete genome	2705	`.........at.g....._`	2722	78
FJ606447.1	Human enterovirus 71 strain BJ08-Z004-3, complete genome	2705	`.........at.g....._`	2722	78
HM053669.1	Human enterovirus 71 strain BJ293, complete genome	2705	`.........at.g....._`	2722	78
HQ456313.1	Human enterovirus A strain GZ2010-95, complete genome	2705	`.........at.g....._`	2722	78
AB205396.1	Human coxsackievirus A18 genomic RNA, complete genome, strain: CAM197	4308	`.........t..g...___`	4323	73
AM084225.1	Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,	4287	`.c..........g..____`	4301	68
FM955278.1	Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA17	4305	`.c.a...........____`	4319	68
HM002489.1	Human enterovirus 71 strain BJ398, complete genome	6695	`____.........t...a.`	6681	68
HQ891923.1	Human enterovirus 71 strain Shanghai 27-2009, complete genome	6695	`____.........t...a.`	6681	68
HQ891924.1	Human enterovirus 71 strain Shanghai 28-2009, complete genome	6695	`____.........t...a.`	6681	68
HQ891927.1	Human enterovirus 71 strain Shanghai 64-2009, complete genome	6695	`____.........t...a.`	6681	68
HQ891928.1	Human enterovirus 71 strain Shanghai 117-2009, complete genome	6695	`____.........t...a.`	6681	68
HQ456307.1	Human enterovirus A strain GZ2010-120, complete genome	6694	`____.........t...a.`	6680	68

VIRsiRNAdb

Database of Viral siRNA / shRNA